Publications of M Kučka

Liu, Z.; Herbert, A.; Chan, Y.; Kučka, M.; Kingsley, D.; Peichel, C.: The fourspine stickleback (Apeltes quadracus) has an XY sex chromosome system with polymorphic inversions on both X and Y chromosomes. PLOS Genetics 21 (5), e1011465 (2025)

Hooper, D.; McDiarmid, C.; Powers, M.; Justyn, N.; Kučka, M.; Hart, N.; Hill, G.; Andolfatto, P.; Chan, Y.; Griffith, S.: Spread of yellow-bill-color alleles favored by selection in the long-tailed finch hybrid system. Current Biology 34 (23), pp. 5444 - 5456 (2024)

Kucka, M.; Chan, Y.: Preparation of Linked-Read Sequencing Libraries using Haplotagging beads. Springer Protocols (2024)

Orteu, A.; Kucka, M.; Gordon, I.; Ng'iru, I.; van der Heijden, E.; Talavera, G.; Warren, I.; Collins, S.; Ffrench-Constant, R.; Martins, D. et al.; Chan, Y.; Jiggins, C.; Martin, S.: Transposable element insertions are associated with Batesian mimicry in the pantropical butterfly Hypolimnas misippus. Molecular Biology and Evolution 41 (3), msae041 (2024)

Jones, L.; Lou, R.; Murray, C.; Robert, D.; Bourne, C.; Bouchard, C.; Kučka, M.; Chan, Y.; Carlon, D.; Wiley, D. et al.; Therkildsen, N.; Baumann, H.: Two distinct population clusters of northern sand lance (Ammodytes dubius) on the northwest Atlantic shelf revealed by whole genome sequencing. ICES Journal of Marine Science 80 (1), fsac217, pp. 122 - 132 (2023)

Martin Cerezo, M.; Raval, R.; de Haro Reyes, B.; Kucka, M.; Chan, Y.; Bryk, J.: Identification and quantification of chimeric sequencing reads in a highly multiplexed RAD-seq protocol. Molecular Ecology Resources 22 (8), pp. 2860 - 2870 (2022)

Montejo-Kovacevich, G.; Meier, J.; Bacquet, C.; Warren, I.; Chan, Y.; Kucka, M.; Salazar, C.; Rueda, N.; Montgomery, S.; McMillan, W. et al.; Kozak, K.; Nadeau, N.; Martin, S.; Jiggins, C.: Repeated genetic adaptation to high altitude in two tropical butterflies. Nature Communications 13, 4676 (2022)

Song, J.; Grant, R.; Behrens, V.; Kučka, M.; Kingman, G.; Soltys, V.; Chan, Y.; Kingsley , D.: Genetic studies of human-chimpanzee divergence using stem cell fusions. Proceedings of the National Academy of Sciences of the United States of America 118 (51), e2117557118 (2021)

Davies, R.; Kucka, M.; Su, D.; Shi, S.; Flanagan, M.; Cunniff, C.; Chan, Y.; Myers, S.: Rapid genotype imputation from sequence with reference panels. Nature Genetics 53 (7), pp. 1104 - 1111 (2021)

Meier, J.; Salazar, P.; Kučka, M.; Davies, R.; Dréau, A.; Aldás, I.; Power, O.; Nadeau, N.; Bridle, J.; Rolian , C. et al.; Barton, N.; McMillan, W.; Jiggins, C.; Chan, Y.: Haplotype tagging reveals parallel formation of hybrid races in two butterfly species. Proceedings of the National Academy of Sciences of the United States of America 118 (25), e2015005118 (2021)

Martin Cerezo, M.; Kucka, M.; Zub, K.; Chan, Y.; Bryk, J.: Population structure of Apodemus flavicollis and comparison to Apodemus sylvaticus in northern Poland based on RAD-seq. BMC Genomics 21 (1), 241 (2020)

Byers, K.; Darragh, K.; Musgrove, J.; Abondano Almeida, D.; Garza, S.; Warren, I.; Rastas, P.; Kučka, M.; Chan, Y.; Merrill, R. et al.; Schulz, S.; McMillan, W.; Jiggins, C.: A major locus controls a biologically active pheromone component in Heliconius melpomene. Evolution: international journal of organic evolution 74 (2), pp. 349 - 364 (2020)

Castro, J.; Yancoskie, M.; Marchini, M.; Belohlavy, S.; Hiramatsu, L.; Kučka, M.; Beluch, W.; Naumann, R.; Skuplik, I.; Cobb, J. et al.; Barton, N.; Rolian, C.; Chan, Y.: An integrative genomic analysis of the Longshanks selection experiment for longer limbs in mice. eLife 8, e42014 (2019)

Zhou, S.; Fu, X.; Pei, P.; Kucka, M.; Liu, J.; Tang, L.; Zhan, T.; He, S.; Chan, Y.; Rödelsperger, C. et al.; Liu, D.; Streit, A.: Characterization of a non-sexual population of Strongyloides stercoralis with hybrid 18S rDNA haplotypes in Guangxi, Southern China. PLoS Neglected Tropical Diseases 13 (5), e0007396 (2019)

Lazzarano, S.; Kučka, M.; Castro, J.; Naumann, R.; Medina, P.; Fletcher, M.; Wombacher, R.; Gribnau, J.; Hochepied, T.; Van Montagu, M. et al.; Libert, C.; Chan, Y.: Genetic mapping of species differences via “in vitro crosses” in mouse embryonic stem cells. Proceedings of the National Academy of Sciences of the United States of America 14 (115), pp. 3680 - 3685 (2018)

Svardal, H.; Blumer, L.; Burskaia, V.; Artiushin, I.; Saha, J.; Camacho Garcia, J.; Campuzano Jiménez, F.; Hooft van der Huysdynen, A.; Elkin, J.; Fischer, B. et al.; Van Houtten, N.; Zhou, C.; Gresham, S.; Malinsky, M.; Linderoth, T.; Sawasawa, W.; Vernaz, G.; Bista, I.; Hickey, A.; Kucka, M.; Louzada, S.; Zatha, R.; Yang, F.; Rusuwa, B.; Santos, M.; Chan, Y.; Joyce, D.; Böhne, A.; Miska, E.; Ngochera, M.; Turner, G.; Durbin, R.: Introgression dynamics of sex-linked chromosomal inversions shape the Malawi cichlid adaptive radiation. In Mértola Evolution Conferences 2025 edition: Speciation: from field studies to genomics, p. 20. Mértola Evolution Conferences 2025 edition: Speciation: from field studies to genomics, Mértola, Portugal, April 05, 2025 - April 06, 2025. (2025)

Choo, L.; Le Moan, A.; Pajot, B.; Faria, R.; Johannesson, K.; Kučka, M.; Chan, F.; Butlin, R.: Association of inversion polymorphisms with ecotypes in the flat periwinkle Littorina fabalis. In Population Genetics Group 58, Talk 26, p. 33. Population Genetics Group 58, Sheffield, UK, January 07, 2025 - January 09, 2025. (2025)

Choo, L.; Le Moan, A.; Faria, R.; Johannesson, K.; Kučka, M.; Chan, Y.; Butlin, R.: Role of inversions in adaptation to wave exposure in the flat periwinkle Littorina fabalis. In Population Genetics Group 57 (PopGroup57), 162, p. 131. Population Genetics Group 57 (PopGroup57), St. Andrews, Scotland, January 08, 2024 - January 10, 2024. (2024)

Evseeva, D.; Pecrix, Y.; Poussier, S.; Wicker, E.; Kucka, M.; Chan, F.; Gopalan-Nair, R.; McCann, H.: Diversification of two-partner secretion systems in the bacterial plant pathogen Ralstonia solanacearum. In 3rd International Conference Controlling Microbes to Fight Infections (CMFI 2023), FT 19, p. 14. 3rd International Conference Controlling Microbes to Fight Infections (CMFI 2023), Tübingen, Germany, October 11, 2023 - October 13, 2023. (2023)

Artiushin, I.; Blumer, L.; Burskaia, V.; Saha, J.; Kučka, M.; Chan, Y.; Durbin, R.; Svardal, H.: Chromosome-scale inversions in the Malawi cichlid radiation: widespread and long-lived. In SMBE 2023, p. 523. Society for Molecular Biology and Evolution Conference 2023 (SMBE 2023), Ferrara, Italy, July 23, 2023 - July 27, 2023. (2023)