Publications of G Rätsch
All genres
Journal Article (44)
1.
Journal Article
4, e05255 (2015)
DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation. eLife 2.
Journal Article
159 (6), pp. 1341 - 1351 (2014)
Species-wide Genetic Incompatibility Analysis Identifies Immune Genes as Hot Spots of Deleterious Epistasis. Cell 3.
Journal Article
30 (9), pp. 1300 - 1301 (2014)
Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis. Bioinformatics 4.
Journal Article
10 (12), pp. 1185 - 1191 (2013)
Systematic evaluation of spliced alignment programs for RNA-seq data. Nature Methods 5.
Journal Article
29 (20), pp. 2529 - 2538 (2013)
MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples. Bioinformatics 6.
Journal Article
8 (8), e1002856 (2012)
Cohesin rings devoid of Scc3 and Pds5 maintain their stable association with the DNA. PLoS Genetics 7.
Journal Article
40 (12), pp. 5666 - 5678 (2012)
HnRNP L and L-like cooperate in multiple-exon regulation of CD45 alternative splicing. Nucleic Acids Research (London) 8.
Journal Article
9 (5), pp. 596 - 609 (2012)
Multiple insert size paired-end sequencing for deconvolution of complex transcriptomes. RNA Biology 9.
Journal Article
477 (7365), pp. 419 - 423 (2011)
Multiple reference genomes and transcriptomes for Arabidopsis thaliana. Nature 10.
Journal Article
6 (9), e24914 (2011)
Persistence and availability of Web services in computational biology. PLoS One 11.
Journal Article
30 (10), pp. 1965 - 1976 (2011)
RNA-Seq analysis in mutant zebrafish reveals role of U1C protein in alternative splicing regulation. EMBO Journal 12.
Journal Article
12, 55 (2011)
Support vector machines-based identification of alternative splicing in Arabidopsis thaliana from whole-genome tiling arrays. BMC Bioinformatics 13.
Journal Article
21 (2), pp. 325 - 341 (2011)
A spatial and temporal map of C. elegans gene expression. Genome Research 14.
Journal Article
108 (1), pp. 254 - 259 (2011)
Receptor-type guanylate cyclase is required for carbon dioxide sensation by Caenorhabditis elegans. Proceedings of the National Academy of Sciences of the United States of America 15.
Journal Article
330 (6012), pp. 1775 - 1787 (2010)
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project. Science 16.
Journal Article
Chapter 11 (Supplement 32), Unit 11.6 (2010)
RNA-Seq read alignments with PALMapper. Current Protocols in Bioinformatics 17.
Journal Article
107 (41), pp. 17466 - 17573 (2010)
Global effects of the small RNA biogenesis machinery on the Arabidopsis thaliana transcriptome. Proceedings of the National Academy of Sciences of the United States of America 18.
Journal Article
38, pp. W348 - W351 (2010)
rQuant.web: a tool for RNA-Seq-based transcript quantitation. Nucleic Acids Research (London) 19.
Journal Article
11, pp. 1799 - 1802 (2010)
The SHOGUN Machine Learning Toolbox. Journal of Machine Learning Research 20.
Journal Article
2010 (2010)
Statistical Tests for Detecting Differential RNA-Transcript Expression from Read Counts. Nature Precedings