Publikationen von J Behr

Behr, J.; Kahles, A.; Zhong, Y.; Sreedharan, V.; Drewe, P.; Rätsch, G.: MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples. Bioinformatics 29 (20), S. 2529 - 2538 (2013)

Gan, X.; Stegle, O.; Behr, J.; Steffen, J.; Drewe, P.; Hildebrand, K.; Lyngsoe , R.; Schultheiss, S.; Osborne, E.; Sreedharan, V. et al.; Kahles, A.; Bohnert, R.; Jean, G.; Derwent, P.; Kersey, P.; Belfield, E.; Harberd, N.; Kemen, F.; Toomajian, C.; Kover , P.; Clark, R.; Rätsch, G.; Mott, R.: Multiple reference genomes and transcriptomes for Arabidopsis thaliana. Nature 477 (7365), S. 419 - 423 (2011)

Sonnenburg, S.; Rätsch, G.; Henschel, S.; Widmer, C.; Behr, J.; Zien, A.; De Bona, F.; Binder, A.; Gehl, C.; Franc, V.: The SHOGUN Machine Learning Toolbox. Journal of Machine Learning Research 11, S. 1799 - 1802 (2010)

Schweikert, G.; Zien, A.; Zeller, G.; Behr, J.; Dieterich, C.; Ong, C.; Philips, P.; De Bona, F.; Hartmann, L.; Bohlen, A. et al.; Krüger, N.; Sonnenburg, S.; Rätsch, G.: mGene: Accurate SVM-based gene finding with an application to nematode genomes. Genome Research 19 (11), S. 2133 - 2143 (2009)

Schweikert, G.; Behr, J.; Zien, A.; Zeller, G.; Ong, C.; Sonnenburg, S.; Rätsch, G.: mGene.web: a web service for accurate computational gene finding. Nucleic Acids Research (London) 37 (Supplement 2), S. W312 - W316 (2009)

Sonnenburg, S.; Schweikert, G.; Philips, P.; Behr, J.; Rätsch, G.: Accurate Splice site Prediction Using Support Vector Machines. NIPS 2006 Workshop on New Problems and Methods in Computational Biology, Whistler, Canada, 08. Dezember 2006. BMC Bioinformatics 8 (Supplement 10), S7, (2007)

Schultheiss, S.; Jean, G.; Behr, J.; Bohnert, R.; Drewe, P.; Görnitz, N.; Kahles, A.; Mudrakarta, P.; Sreedharan, V.; Zeller, G. et al.; Rätsch, G.: Oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS Data. In BMC Bioinformatics, 12 (Supplement 11), A7. Seventh International Society for Computational Biology (ISCB) Student Council Symposium 2011, Wien, Austria, 15. Juli 2011. BioMed Central (2011)

Gan, X.; Behr, J.; Steffen, J.; Hildebrand, K.; Allchin, L.; Goodstadt, L.; Stegle, O.; Drewe, P.; Lyngsoe, R.; Sreedharan, V. et al.; Osborne, E.; Toomajian, C.; Kover, P.; Rätsch, G.; Clark, R.; Mott, R.: Accurate Sequencing of 18 Genomes of Arabidopsis thaliana and Its Use in Imputing the Genome Sequences of Over 600 MAGIC Recombinant Inbred Lines. In 22nd International Conference on Arabidopsis Research (ICAR 2011), 22, S. 78. 22nd International Conference on Arabidopsis Research (ICAR 2011), Madison, WI, USA, 22. Juni 2011 - 25. Juni 2011. (2011)

Bohnert, R.; Behr, J.; Kahles, A.; Jean, G.; Raetsch, G.: Oonline transcriptome analysis http://galaxy.tuebingen.mpg.de. In 2010 Meeting on the Biology of Genomes, S. 257. 2010 Meeting on the Biology of Genomes, Cold Spring Harbor, NY, USA, 11. Mai 2010 - 15. Mai 2010. (2010)

Behr, J.; Bohnert, R.; Kahles, A.; Rätsch, G.: Simultaneous RNA-seq-based Transcript Inference and Quantification Using Mixed Integer Programming. NIPS 2011 Workshop Machine Learning in Computational Biology , Sierra Nevada, Spain (2011)

Drewe, P.; Stegle, O.; Behr, J.; Clark, R.; Rätsch, G.; Mott, R.: Multiple reference genomes and transcriptomes for Arabidopsis thaliana. 4th Berlin Summer Meeting: “Computational & Experimental Molecular Biology Meet”, Berlin, Germany (2011)

Kahles, A.; Bohnert, R.; Ribeca, P.; Behr, J.; Rätsch, G.: RGASP evaluation of RNA-Seq read alignment algorithms. 4th Berlin Summer Meeting: “Computational & Experimental Molecular Biology Meet”, Berlin, Germany (2011)

Steffen, J.; Behr, J.; Drewe, P.; Hillebrand, K.; Kover, P.; Lyngsoe, R.; Mott, R.; Osborne, E.; Rätsch, G.; Schultheiss, S. et al.; Sreedharan, V.; Stegle, O.; Toomajin, C.; Xiangchao, G.; Clark, R.: Extensive Genomic and Transcriptomic Variation in the 19 Founders of the Arabidopsis MAGIC Lines. 22nd International Conference on Arabidopsis Research (ICAR 2011), Madison, WI, USA (2011)

Bohnert, R.; Behr, J.; Kahles, A.; Jean, G.; Rätsch, G.: Online Quantitative Transcriptome Analysis. 18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2010), Boston, MA, USA (2010)

Bohnert, R.; Behr, J.; Rätsch, G.: Transcript quantification with RNA-Seq data. Fifth International Society for Computational Biology Student Council Symposium (ISMB/ECCB 2009), Stockholm, Sweden (2009)