Publications of VT Sreedharan

Sreedharan, V.; Schultheiss, S.; Jean, G.; Kahles, A.; Bohnert, R.; Drewe, P.; Mudrakarta, P.; Görnitz, N.; Zeller, G.; Rätsch, G.: Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis. Bioinformatics 30 (9), pp. 1300 - 1301 (2014)

Behr, J.; Kahles, A.; Zhong, Y.; Sreedharan, V.; Drewe, P.; Rätsch, G.: MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples. Bioinformatics 29 (20), pp. 2529 - 2538 (2013)

Kulemzina, I.; Schumacher, M.; Verma, V.; Reiter, J.; Metzler, J.; Failla, A.; Lanz, C.; Sreedharan, V.; Rätsch, G.; Ivanov, D.: Cohesin rings devoid of Scc3 and Pds5 maintain their stable association with the DNA. PLoS Genetics 8 (8), e1002856 (2012)

Gan, X.; Stegle, O.; Behr, J.; Steffen, J.; Drewe, P.; Hildebrand, K.; Lyngsoe , R.; Schultheiss, S.; Osborne, E.; Sreedharan, V. et al.; Kahles, A.; Bohnert, R.; Jean, G.; Derwent, P.; Kersey, P.; Belfield, E.; Harberd, N.; Kemen, F.; Toomajian, C.; Kover , P.; Clark, R.; Rätsch, G.; Mott, R.: Multiple reference genomes and transcriptomes for Arabidopsis thaliana. Nature 477 (7365), pp. 419 - 423 (2011)

Spencer, W.; Zeller, G.; Watson, J.; Henz, S.; Watkins, K.; McWhirter, R.; Petersen, S.; Sreedharan, V.; Widmer, C.; Jo, J. et al.; Reinke, V.; Petrella, L.; Strohme, S.; Von Stetina, S.; Katz, M.; Shaham, S.; Rätsch, G.; Miller, D.: A spatial and temporal map of C. elegans gene expression. Genome Research 21 (2), pp. 325 - 341 (2011)

Jean, G.; Kahles, A.; Sreedharan, V.; De Bona, F.; Rätsch, G.: RNA-Seq read alignments with PALMapper. Current Protocols in Bioinformatics Chapter 11 (Supplement 32), Unit 11.6 (2010)

Schultheiss, S.; Jean, G.; Behr, J.; Bohnert, R.; Drewe, P.; Görnitz, N.; Kahles, A.; Mudrakarta, P.; Sreedharan, V.; Zeller, G. et al.; Rätsch, G.: Oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS Data. In BMC Bioinformatics, 12 (Supplement 11), A7. Seventh International Society for Computational Biology (ISCB) Student Council Symposium 2011, Wien, Austria, July 15, 2011. BioMed Central (2011)