Publications
_{Evolutionary Genomics of Complex Traits}

Ishigohoka, J.; Lugo Ramos, J.; Durieux, G.; Reinsch, S.; Delmore, K.; Justen, H.; Illera, J.; Perez-Tris, J.; Liedvogel, M.: Differential epigenetic regulation underlies evolutionary transition of seasonal migration. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 381 (1955), 20250022 (2026)

Ishigohoka, J.; Liedvogel, M.: Shifting Balancing Selection Underlies an Inversion Cline in Eurasian Blackcap. Ecology and Evolution 16 (6), e73749 (2026)

Tautz, D.; Pallares, L.; Andersson, L.; Barghi, N.; Barton, N.; Bay, R.; Chan, Y.; Hancock, A.; Kaiser, T.; Koenig, D. et al.; Kontarakis, Z.; Liedvogel, M.; de Meaux, J.; Nordborg, M.; Palmer, A.; Purugganan, M.; Schlötterer, C.; Schmid, K.; Stainier, D.; Weigel, D.; Wolf, J.; Ebert, D.; Gibson, G.: Beyond Mendel: a call to revisit the genotype-phenotype map through new experimental paradigms. Genetics 232 (4), iyag024 (2026)

Pallares, L.; Melo, D.; Wolf, S.; Cofer, E.; Abhyankar, V.; Peng, J.; Ayroles, J.: Saturating the eQTL Map in Drosophila Melanogaster: Genome-Wide Patterns of CIS and Trans Regulation of Transcriptional Variation in Outbred Populations. Cell genomics 5 (12), 101033 (2025)

Brasó-Vives, M.; Hartasánchez, D.; Ayroles, J.; Bucao, C.; Furlan-Magaril, M.; Majic, P.; Pallares, L.; Phipps-Tan, J.; Rogers, T.; Ruiz-Herrera, A. et al.; Santos-Rodriguez, G.; Vellnow, N.; Wilcox, J.; Rodríguez, J.: The genomic kaleidoscope: on the hidden dimensions of within-species genomic diversity. Genome Biology and Evolution 17 (11), evaf204 (2025)

Li, X.; Srinivasan, V.; Laiker, I.; Misunou, N.; Frankel, N.; Pallares, L.; Crocker, J.: TF-High-Evolutionary: in vivo mutagenesis of gene regulatory networks for the study of the genetics and evolution of the Drosophila regulatory genome. Molecular Biology and Evolution 41 (8), msae167 (2024)

Melo, D.; Pallares, L.; Ayroles, J.: Reassessing the modularity of gene co-expression networks using the Stochastic Block Model. PLOS Computational Biology 20 (7), e1012300 (2024)

Abraham, J.; Lin, B.; Miller, A.; Henry, L.; Demmel, M.; Warungu, R.; Mwangi, M.; Lobura, P.; Pallares, L.; Ayroles, J. et al.; Pringle, R.; Rubenstein, D.: Determinants of microbiome composition: Insights from free-ranging hybrid zebras (Equus quagga × grevyi). Molecular Ecology 33 (11), e17370 (2024)

Tautz, D.; Reeves, G.; Pallares, L.: The New (Old) Genetics: Version 2.0. Nova Acta Leopoldina 2020.1 (2023)

Wolf, S.; Melo, D.; Garske, K.; Pallares, L.; Lea, A.; Ayroles, J.: Characterizing the landscape of gene expression variance in humans. PLoS Genetics 19 (7), e1010833 (2023)

Pallares, L.; Lea, A.; Han, C.; Filippova, E.; Andolfatto, P.; Ayroles, J.: Dietary stress remodels the genetic architecture of lifespan variation in outbred Drosophila. Nature Genetics 55 (1), pp. 123 - 129 (2023)

Pallares, L.: Organismal-level regulation of phenotypic variability in Drosophila. In EURO EVO DEVO 2026, C17.1. 10th European Society for Evolutionary Developmental Biology: EURO EVO DEVO 2026, Glasgow, United Kingdom, June 09, 2026 - June 12, 2026. (2026)

Ishigohoka, J.: Adaptive randomness: How does phenotypic stochasticity fuel adaptive evolution? In Population Genetics Group 59 (PopGroup 59), p. 73. Population Genetics Group 59 (PopGroup 59), Lille, France, January 07, 2026 - January 09, 2026. (2026)

Pallares, L.: Genetic and Environment-Dependent regulation of Transcriptional Variance in Outbred Drosophila. In European Drosophila Research Conference (EDRC 2025). European Drosophila Research Conference (EDRC 2025) , Alicante, Spain, August 25, 2025 - August 28, 2025. (2025)

Li, X.; Srinivasan, V.; Laiker, I.; Misunou, N.; Frankel, N.; Pallares, L.; Crocker, J.: TF-High-Evolutionary: in vivo mutagenesis of gene regulatory networks for the study of the genetics and evolution of the Drosophila regulatory genome. In 66th Drosophila Research Conference (Dros25), 68, p. 30. 66th Drosophila Research Conference (Dros25), San Diego, CA, USA, March 19, 2025 - March 23, 2025. (2025)

Phipps-Tan, J.; Ayroles, J.; Pallares, L.: Beyond averages: transcriptional variability in outbred Drosophila melanogaster and its environmental and genetic dependence. In SMBE 2024, p. 523. Society for Molecular Biology and Evolution Conference 2024 (SMBE 2024), Puerto Vallarta, Mexico, July 07, 2024 - July 11, 2024. (2024)

Alishayeva, S.: Adaptive evolution: navigating stress and stability in fruit fly development. In PhD Students’ Symposium 2024. PhD Students’ Symposium 2024, Tübingen, Germany, June 19, 2024 - June 20, 2024. (2024)

Yi, T.: Using fruitflies to understand how transcriptional variability evolves in animals. In PhD Students’ Symposium 2024. PhD Students’ Symposium 2024, Tübingen, Germany, June 19, 2024 - June 20, 2024. (2024)

Forsberg, S.; Melo, D.; Wolf, S.; Grenier, J.; Tang, M.; Henry, L.; Pallares, L.; Clark, A.; Ayroles, J.: Longitudinal sequencing reveals polygenic and epistatic nature of genomic response to selection. In SMBE 2023, pp. 376 - 377. Society for Molecular Biology and Evolution Conference 2023 (SMBE 2023), Ferrara, Italy, July 23, 2023 - July 27, 2023. (2023)

Pallares, L.: The dynamic nature of the Genotype-Phenotype map: a story about how dietary stress remodels the genetic architecture of lifespan variation in Drosophila. In 2nd Münster Evolution Meeting (MEM 2023), p. 85. 2nd Münster Evolution Meeting (MEM 2023), Münster, Germany, March 13, 2023 - March 16, 2023. (2023)