Publications of YF Chan

Arnegard, M.; McGee, M.; Matthews, B.; Marchinko, K.; Conte, G.; Kabir, S.; Bedford, N.; Bergek, S.; Chan, Y.; Jones, F. et al.; Kingsley, D.; Peichel, C.; Schluter, D.: Genetics of ecological divergence during speciation. Nature 511 (7509), pp. 307 - 311 (2014)

Wark, A.; Mills, M.; Dang, L.-H.; Chan, Y.; Jones, F.; Brady, S.; Absher, D.; Grimwood, J.; Schmutz, J.; Myers, R. et al.; Kingsley, D.; Peichel, C.: Genetic architecture of variation in the lateral line sensory system of threespine sticklebacks. G3: Genes, Genomes, Genetics 2 (9), pp. 1047 - 1056 (2012)

Chan, Y.; Jones, F.; McConnell, E.; Bryk, J.; Bünger, L.; Tautz, D.: Parallel selection mapping using artificially selected mice reveals body weight control loci. Current Biology 22 (9), pp. 794 - 800 (2012)

Deagle, B.; Jones, F.; Chan, Y.; Absher, D.; Kingsley, D.; Reimchen, T.: Population genomics of parallel phenotypic evolution in stickleback across stream-lake ecological transitions. Proceedings of the Royal Society B: Biological Sciences 279 (1732), pp. 1277 - 1286 (2012)

Jones, F.; Grabherr, M.; Chan, Y.; Russell, P.; Mauceli, E.; Johnson, J.; Swofford, R.; Pirun, M.; Zody, M.; White, S. et al.; Birney, E.; Searle, S.; Schmutz, J.; Grimwood, J.; Dickson, M.; Myers, R.; Miller, C.; Summers, B.; Knecht, A.; Brady, S.; Zhang, H.; Pollen, A.; Howes, T.; Amemiya, C.; Lander, E.; Di Palma, F.; Lindblad-Toh, K.; Kingsley, D.: The genomic basis of adaptive evolution in threespine sticklebacks. Nature 484 (7392), pp. 55 - 61 (2012)

Jones, F.; Chan, Y.; Schmutz, J.; Grimwood, J.; Brady, S.; Southwick, A.; Absher, D.; Myers, R.; Reimchen, T.; Deagle, B. et al.; Schluter, D.; Kingsley, D.: A genome-wide SNP genotyping array reveals patterns of global and repeated species-pair divergence in sticklebacks. Current Biology 22, pp. 83 - 90 (2012)

Greenwood, A.; Jones, F.; Chan, Y.; Brady, S.; Absher, D.; Grimwood, J.; Schmutz, J.; Myers, R.; Kingsley, D.; Peichel, C.: The genetic basis of divergent pigment patterns in juvenile threespine sticklebacks. Heredity 107 (2), pp. 155 - 166 (2011)

Chan, Y.; Marks, M.; Jones, F.; Villarreal Jr., G.; Shapiro, M.; Brady, S.; Southwick, A.; Absher, D.; Grimwood, J.; Schmutz, J. et al.; Myers, R.; Petrov, D.; Jónsson, B.; Schluter, D.; Bell, M.: Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer. Science 327 (5963), pp. 302 - 305 (2010)

Kitano, J.; Ross, J.; Mori, S.; Kume, M.; Jones, F.; Chan, Y.; Absher, D.; Grimwood, J.; Schmutz, J.; Myers, R. et al.; Kingsley, D.; Peichel, C.: A role for a neo-sex chromosome in stickleback speciation. Nature 461 (7267), pp. 1079 - 1083 (2009)

Ullate-Agote, A.; Chan, Y.; Tzika, A.: A step-by-step guide to assemble a reptilian genome. In: Methods in Molecular Biology, Vol. 1650 (Ed. Guojun , S.). Springer, US (2017)

Choo, L.; Le Moan, A.; Faria, R.; Johannesson, K.; Kučka, M.; Chan, Y.; Butlin, R.: Role of inversions in adaptation to wave exposure in the flat periwinkle Littorina fabalis. In Population Genetics Group 57 (PopGroup57), 162, p. 131. Population Genetics Group 57 (PopGroup57), St. Andrews, Scotland, January 08, 2024 - January 10, 2024. (2024)

Evseeva, D.; Pecrix, Y.; Poussier, S.; Wicker, E.; Kucka, M.; Chan, F.; Gopalan-Nair, R.; McCann, H.: Diversification of two-partner secretion systems in the bacterial plant pathogen Ralstonia solanacearum. In 3rd International Conference Controlling Microbes to Fight Infections (CMFI 2023), FT 19, p. 14. 3rd International Conference Controlling Microbes to Fight Infections (CMFI 2023), Tübingen, Germany, October 11, 2023 - October 13, 2023. (2023)

Artiushin, I.; Blumer, L.; Burskaia, V.; Saha, J.; Kučka, M.; Chan, Y.; Durbin, R.; Svardal, H.: Chromosome-scale inversions in the Malawi cichlid radiation: widespread and long-lived. In SMBE 2023, p. 523. Society for Molecular Biology and Evolution Conference 2023 (SMBE 2023), Ferrara, Italy, July 23, 2023 - July 27, 2023. (2023)

Cho, L.; Le Moan, A.; Faria, R.; Johannesson, K.; Kučka, M.; Chan, Y.: Role of chromosomal inversions in adaption and speciation in the flat periwinkle Littorina fabalis. In SMBE 2023, pp. 519 - 520. Society for Molecular Biology and Evolution Conference 2023 (SMBE 2023), Ferrara, Italy, July 23, 2023 - July 27, 2023. (2023)

Hooper, D.; McDiarmid, C.; Powers, M.; Carpenter, A.; Justyn, N.; Kucka, M.; Hart, N.; Hill, G.; Andolfatto, P.; Griffith, S. et al.; Chan, Y.: Selective sweeps on different carotenoid processing genes underlie the divergence in bill color in the long-tailed finch (Poephila acuticauda). In Evolution 2023, 542. Evolution 2023: Joint Annual Meeting of the American Society of Naturalists, the Society for the Study of Evolution, and the Society of Systematic Biologists, Albuquerque, NM, USA, June 21, 2023 - June 25, 2023. (2023)

Chan, F.: Tracking the tempo and target of natural/artificial selection in a thousand mice and butterflies by haplotype tagging and sequencing. In 6th International Conference of Quantitative Genetics (ICQG 2020), 120, p. 22. 6th International Conference of Quantitative Genetics (ICQG 2020), November 02, 2020 - November 13, 2020. (2020)

Hiramatsu, L.; Belohlavy, S.; Kučka, M.; Rolian, C.; Barton, N.; Chan, Y.: Tracking allele trajectories over 20 generations of selection for long limbs in mice. In SMBE 2019, SMBE-OR-196, p. 82. Society for Molecular Biology and Evolution Conference 2019 (SMBE 2019), Manchester, UK, July 21, 2019 - July 25, 2019. (2019)

Barton, N.; Belohlavy, S.; Sachdeva, H.; Chan, F.: How much of the response to selection can be attributed to discrete genes? In Population, Evolutionary, and Quantitative Genetics Conference (PEQG 2018), 306T, p. 116. 2018 Population, Evolutionary, and Quantitative Genetics Conference (PEQG 2018), Madison, WI, USA, May 13, 2018 - May 16, 2018. (2018)

Castro, J.; Yancoskie, M.; Marchini, M.; Belohlavy, S.; Kucka, M.; Beluch, W.; Naumann, R.; Skuplik, I.; Cobb, J.; Barton, N. et al.; Rolian, C.; Chan, Y.: The genomic and molecular basis of rapid and polygenic response to selection for long leg length in mice. In Population, Evolutionary, and Quantitative Genetics Conference (PEQG 2018), 318M, p. 121. 2018 Population, Evolutionary, and Quantitative Genetics Conference (PEQG 2018), Madison, WI, USA, May 13, 2018 - May 16, 2018. (2018)

Hiramatsu, L.; Belohlavy, S.; Kučka, M.; Barton, N.; Rolian, C.; Chan, Y.: Tracking signatures of response over 20 generations of selection for long leg length in mice. In Population, Evolutionary, and Quantitative Genetics Conference (PEQG 2018), 341T, pp. 129 - 130. 2018 Population, Evolutionary, and Quantitative Genetics Conference (PEQG 2018), Madison, WI, USA, May 13, 2018 - May 16, 2018. (2018)